PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 72871
Common NameSELMODRAFT_72871
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family ERF
Protein Properties Length: 80aa    MW: 9004.89 Da    PI: 8.4946
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
72871genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.12.2e-18555155
    AP2  1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
           +++ GVr+++ +grWvAeI+d      ++ r +lg+++ ae+Aa+a+++a+  l+g
  72871  5 KKFVGVRQRS-SGRWVAEIKD----TaQKVRLWLGTYDNAEDAARAYDEAASLLRG 55
           589****999.7*********....3346**********************99988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381232.4E-21178IPR017392AP2/ERF transcription factor ERF/PTI6
CDDcd000183.71E-26565No hitNo description
PfamPF008478.8E-13655IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.8E-28664IPR001471AP2/ERF domain
PROSITE profilePS5103219.19663IPR001471AP2/ERF domain
SuperFamilySSF541712.68E-19663IPR016177DNA-binding domain
SMARTSM003801.3E-29669IPR001471AP2/ERF domain
PRINTSPR003676.0E-7718IPR001471AP2/ERF domain
PRINTSPR003676.0E-72945IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 80 aa     Download sequence    Send to blast
SKRRKKFVGV RQRSSGRWVA EIKDTAQKVR LWLGTYDNAE DAARAYDEAA SLLRGADSRT  60
NFASSGTPFS PCQEEELDDH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002967481.12e-53hypothetical protein SELMODRAFT_72871, partial
SwissprotQ6J9S11e-28RA211_ARATH; Ethylene-responsive transcription factor RAP2-11
TrEMBLD8R8K82e-53D8R8K8_SELML; Putative uncharacterized protein (Fragment)
STRINGEFJ320805e-53(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.19e-20related to AP2 11
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]